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To convert a Docker container to a Singularity image, we use docker2singularity.
Base command:
docker run -v /var/run/docker.sock:/var/run/docker.sock -v <output dir>:/output --privileged -t --rm singularityware/docker2singularity <image name and label>
Example command to create an image from the Docker container bacterial_env:latest
in the directory /Volumes/images/singularity
:
docker run \
-v /var/run/docker.sock:/var/run/docker.sock \
-v /Volumes/images/singularity:/output \
--privileged -t --rm \
singularityware/docker2singularity \
bacterial_env:latest
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