Katie Lennard's activity
From 05/24/2018 to 06/22/2018
06/22/2018
- 02:51 PM Setting up a portable 16S rDNA pipeline for CBIO Feature #54: DADA2 workflow as an additional option for processing 16S data
- The following updates have been made:
1. *Run in parallel where possible (i.e. one job/sample*) - done
2. *Run on...
06/07/2018
- 10:46 AM Setting up a portable 16S rDNA pipeline for CBIO Feature #54: DADA2 workflow as an additional option for processing 16S data
- The pipeline is now up and running. Several features were added to make the pipeline more user-friendly:
1. Include ...
06/04/2018
- nextflow.log for testrun matching screenshot
- Test pipeline execution summary on hex
- 04:42 PM Setting up a portable 16S rDNA pipeline for CBIO Feature #54: DADA2 workflow as an additional option for processing 16S data
- The DADA2 Nextflow pipeline has now been customized for use on UCT hex.
Major updates from originally shared pipeli...
06/01/2018
- 12:03 PM Setting up a portable metagenome assembly pipeline for CBIO 41.50 hours (Project: Setting up a portable metagenome assembly pipeline for CBIO)
- Balance of total hours spent on WGS development by end of May
- 11:58 AM Setting up a portable 16S rDNA pipeline for CBIO 37.00 hours (Feature #54 (New): DADA2 workflow as an additional option for processing 16S data)
- Total time spent by end of May
- 11:56 AM Setting up a portable RNA-Seq pipeline for CBIO 37.00 hours (Project: Setting up a portable RNA-Seq pipeline for CBIO)
- Total time spent by end of May
05/31/2018
- 02:51 PM Setting up a portable metagenome assembly pipeline for CBIO 28.50 hours (Project: Setting up a portable metagenome assembly pipeline for CBIO)
- hours spent for May
05/28/2018
- 03:35 PM Setting up a portable 16S rDNA pipeline for CBIO Wiki edit: Wiki (#3)
- 03:33 PM Setting up a portable 16S rDNA pipeline for CBIO Wiki edit: Wiki (#2)
- 03:13 PM Setting up a portable 16S rDNA pipeline for CBIO Wiki edit: Wiki (#1)
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