Katie Lennard's activity
From 06/18/2019 to 07/17/2019
07/15/2019
- 11:37 AM Pathogen outbreak study - Pseudomonas single isolate WGS Check coverage cutoffs for SNP analysis
- SNP analysis is done with freebayes (on quality trimmed and filtered reads) with default settings ( -C 2 -min_coverag...
07/02/2019
- 06:30 PM Microbiota profiling of cows milk with and without traditional fermentation Wiki edit: Wiki (#6)
- 02:12 PM Microbiota profiling of cows milk with and without traditional fermentation Data processed with dada2 pipeline on Ilifu
- Both read trim strategies and taxonomic DB used will be considered to try and improve species-level resolution compar...
06/26/2019
- 03:25 PM Microbiota profiling of cows milk with and without traditional fermentation Wiki edit: Wiki (#5)
- 03:23 PM Microbiota profiling of cows milk with and without traditional fermentation Wiki edit: Wiki (#4)
- 01:03 PM Microbiota profiling of cows milk with and without traditional fermentation Wiki edit: Wiki (#3)
- 01:03 PM Microbiota profiling of cows milk with and without traditional fermentation Wiki edit: Wiki (#2)
- 01:02 PM Microbiota profiling of cows milk with and without traditional fermentation Meetin with Pieter and Mike to discuss analysis
- Mainly they are looking for improved species-level resolution with a few specific species they are hoping to see. I w...
- 11:15 AM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#15)
06/25/2019
- 05:21 PM The impact of fire and herbivores on soil microbes dada2 testrun on HPC successfull
- Config files edited by user (on HPC copy of repo). https://github.com/kviljoen/16S-rDNA-dada2-pipeline/blob/master/co...
- 05:18 PM The impact of fire and herbivores on soil microbes Wiki edit: Wiki (#2)
- 05:18 PM The impact of fire and herbivores on soil microbes Wiki edit: Wiki (#1)
Also available in: Atom