Support #113
QC of files
Status:
New
Priority:
Normal
Assignee:
Jon Ambler
Description
Running the fastq files through QC to determine if the quality is acceptable.
Using MultiQC pipeline
History
Updated by Jon Ambler about 5 years ago
- % Done changed from 0 to 10
After the pipeline was set up, the initial runs failed, and upon inspection of the fastq files it appears that they are using illumina 1.5 encoding for the quality scores, as seen by the use of the "J" character.
The files will need to be converted to 1.9 scores.