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Differential absence/presence Ps assembled gene set

Fisher's exact testing on the Prokka-annotated list of genes acquired using the Tychus assembly module
Added by Katie Lennard over 5 years ago

From the Ps_assembly_annotated_contigs folder imported into R (one .tsv file per sample). Hypothetical proteins and proteins with no annotation removed. Sample from during Ps outbreak compared to samples from before/after outbreak in terms of gene content: 213 significant hits after multiple testing correction

fishers_sig_genes_beforeafter_vs_during_outbreak.csv (21.2 KB) fishers_sig_genes_beforeafter_vs_during_outbreak.csv Katie Lennard, 11/22/2019 02:50 PM

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