Setting up a portable metagenome assembly pipeline for CBIO

05/16/2018

02:41 PM Support #50: Validate binning using single copy core genes

checkM successfully run on hex. Example outputs listed under the 'Files' tab (checkm.e1851691.txt and checkm.o1851691... Katie Lennard

05/11/2018

11:37 AM Support #50 (New): Validate binning using single copy core genes

The quality of the binning results from CONCOCT can be examined by looking at single copy core genes (i.e. genes that... Katie Lennard

04/30/2018

11:42 AM Bug #46 (New): Read binning with CONCOCT

CONCOCT “bins” metagenomic contigs. Metagenomic binning is the process of clustering sequences into clusters correspo... Katie Lennard