Setting up a portable metagenome assembly pipeline for CBIO

05/18/2018

09:25 AM bin_qa_plot.png

CheckM bin QC summary plot Katie Lennard

05/16/2018

02:41 PM Support #50: Validate binning using single copy core genes

checkM successfully run on hex. Example outputs listed under the 'Files' tab (checkm.e1851691.txt and checkm.o1851691... Katie Lennard

02:38 PM checkm.e1851691.txt

checkM run report (see Issues) Katie Lennard

02:38 PM checkm.o1851691.txt

Bin QC report generated using checkM (see Issues) Katie Lennard

05/11/2018

11:37 AM Support #50 (New): Validate binning using single copy core genes

The quality of the binning results from CONCOCT can be examined by looking at single copy core genes (i.e. genes that... Katie Lennard

05/07/2018

10:50 AM scripts_for_redmine.tar

See Wiki for details - pipeline development scripts Katie Lennard