Setting up a portable 16S rDNA pipeline for CBIO

06/22/2018

02:51 PM Feature #54: DADA2 workflow as an additional option for processing 16S data

The following updates have been made:
1. *Run in parallel where possible (i.e. one job/sample*) - done
2. *Run on... Katie Lennard

06/07/2018

02:37 PM Feature #53: Setup a decontamination pipeline for Mark's project

Hi,
I have prepared scripts for the detection of contaminants [detect.sh] and removal of contaminant [decont.sh] ... Samson Kilaza

11:03 AM Feature #54: DADA2 workflow as an additional option for processing 16S data

Good progress Katie, I will make a try at some point.
Samson
Katie Lennard wrote:
> The pipeline is now up a... Samson Kilaza

10:46 AM Feature #54: DADA2 workflow as an additional option for processing 16S data

The pipeline is now up and running. Several features were added to make the pipeline more user-friendly:
1. Include ... Katie Lennard