Wiki » History » Version 1
Katie Lennard, 11/11/2021 03:39 PM
| 1 | 1 | Katie Lennard | # Wiki |
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| 3 | # Raw reads |
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| 5 | Available on katiel@slurm.ilifu.ac.za:/scratch3/users/katiel/Clinton/ |
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| 6 | |||
| 7 | # Analyses |
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| 9 | Available on katiel@slurm.ilifu.ac.za:/scratch3/users/katiel/Clinton/ |
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| 11 | 1. srst2 AMR profiling against the ARGAnnot DB (haven't found a VF DB for Serratia |
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| 12 | 2. Core SNPs (alignment) and WGS assembly (gene presence/absence matrix) using Tychus |
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| 15 | R downstream analyes: AMR heatmap with phylogenetic tree constructed from core SNP data. |