Katie Lennard's activity
From 03/20/2019 to 04/18/2019
04/15/2019
- 12:01 PM HIV latency transcriptomics of resting CD4+ T cells Raw files received from Walter Nevondo for 1st dataset
- Processing has been delayed somewhat by the Nicol project. Will now start testing on this first dataset. Still expect...
- 11:31 AM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#11)
- 11:23 AM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#10)
04/10/2019
- 12:32 PM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#9)
- 11:09 AM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#8)
04/09/2019
- 06:11 PM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#7)
- 03:43 PM Pathogen outbreak study - Pseudomonas single isolate WGS Tychus pipeline ran successfully for E. coli and Pseudomonas
- The results can be found on Ilifu /ceph/cbio/users/katie/Nicol/ and have been transferred to medmicro's Athena server...
04/08/2019
- 02:51 PM Pathogen outbreak study - Pseudomonas single isolate WGS 97.00 hours (Feature #69 (New): Implement/adapt Tychus Nextflow pipeline)
- Time spent on Single isolate pipeline planning and implementation up until 5/4/19
04/05/2019
- 01:46 PM Pathogen outbreak study - Pseudomonas single isolate WGS FastQC performed on E. coli and Pseudomonas raw data
- This was done on Ilifu using the nextflow pipeline https://github.com/kviljoen/16S_quick_QC.git
E. coli fastqc re... - 12:11 PM Pathogen outbreak study - Pseudomonas single isolate WGS Wiki edit: Wiki (#6)
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