Redmine

04/29/2019

06:01 PM HIV latency transcriptomics of resting CD4+ T cells Results from run 1 sent to Walter - QC issues detected

The multiqc report highlighted potential issues with sample and/or library prep. A large proportion of reads were < 1... Katie Lennard

04/15/2019

12:01 PM HIV latency transcriptomics of resting CD4+ T cells Raw files received from Walter Nevondo for 1st dataset

Processing has been delayed somewhat by the Nicol project. Will now start testing on this first dataset. Still expect... Katie Lennard

04/09/2019

03:43 PM Pathogen outbreak study - Pseudomonas single isolate WGS Tychus pipeline ran successfully for E. coli and Pseudomonas

The results can be found on Ilifu /ceph/cbio/users/katie/Nicol/ and have been transferred to medmicro's Athena server... Katie Lennard

04/05/2019

01:46 PM Pathogen outbreak study - Pseudomonas single isolate WGS FastQC performed on E. coli and Pseudomonas raw data

This was done on Ilifu using the nextflow pipeline https://github.com/kviljoen/16S_quick_QC.git
E. coli fastqc re... Katie Lennard