Redmine

07/02/2019

09:21 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 2.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Methods summary presentation created and sent to Relebohile Thys Potgieter

09:21 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 2.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Data analyzed, experimental design file created for cells and tissues separately. Thys Potgieter

09:19 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 6.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Bug fixes and unit tests for mqmetaproteomics pipeline Thys Potgieter

09:18 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 6.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Quality control - samples less than 1 percent assigned spectra excluded. normalization and imputation methods tested. Thys Potgieter

09:16 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 2.00 hours (Support #85 (Resolved): MaxQuant run of raw proteomics data)

MaxQuant run restarted, experiment names added Thys Potgieter

06/05/2019

10:17 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 2.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Failing unit tests for mqmetaproteomics fixed Thys Potgieter

06/04/2019

05:54 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 3.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Modifications to docker container so that it will run with singularity, git README added: https://github.com/uct-cbio... Thys Potgieter