Thys Potgieter

MetaNovo: Metaproteomics database generation (Manager, 04/20/2019)
Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) (Developer, 04/24/2019)
Metaproteome functional and taxonomic profiling (Manager, 04/25/2019)
Infant stool metaproteome analysis (Manager, 04/25/2019)
Multi-omics analysis of 2 differentially virulent strains of Mycobacterium tuberculosis Beijing. (Manager, 04/29/2019)
A proteogenomic analysis of 2 differentially virulent strains of Mycobacterium tuberculosis (Manager, 04/29/2019)

11:12 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #104 (Resolved): Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added.: Thys Potgieter
11:12 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 3.00 hours (Feature #104 (Resolved): Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added.): Latest mRNA data integrated, proteomics average intensity added, addition of InterProScan and KO annotations, tables ... Thys Potgieter
11:11 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #98 (Closed): Sample processing with MetaMorpheus: Shaun Garnett is doing this Thys Potgieter
11:10 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #103 (Resolved): Median group intensity added to output for visualization of proteomics target expression profiles: Thys Potgieter
11:09 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 3.00 hours (Feature #103 (Resolved): Median group intensity added to output for visualization of proteomics target expression profiles): Median iBAQ intensity added to summary table, unit-tests added Thys Potgieter

01:34 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 2.00 hours (Feature #104 (Resolved): Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added.): Mean protein abundance added to pipeline output. Started on integrating mRNA in summary table. Thys Potgieter
01:33 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #104 (Resolved): Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added.: a single excel file with protein and mRNA data for all time points, including mean protein intensity per group, p-val... Thys Potgieter

02:20 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #103 (Resolved): Median group intensity added to output for visualization of proteomics target expression profiles: log2FC of iBAQ intensity, median values in differential abundance output tables (in addition to Fold Change). For dat... Thys Potgieter

07:20 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 4.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization ): different normalization and imputation techniques tested - Median, Quantile, and None compared. Slides generated. Med... Thys Potgieter

12:29 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 2.00 hours (Feature #98 (Closed): Sample processing with MetaMorpheus): Sample Calibration run with MetaMorpheus Thys Potgieter

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