Redmine

07/19/2019

06:38 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization

1) configurable normalization method (eg median, quantiles)
2) configurable imputation method (eg bayes PCA, KNN)
3... Thys Potgieter

07/15/2019

11:37 AM Pathogen outbreak study - Pseudomonas single isolate WGS Check coverage cutoffs for SNP analysis

SNP analysis is done with freebayes (on quality trimmed and filtered reads) with default settings ( -C 2 -min_coverag... Katie Lennard

07/02/2019

02:12 PM Microbiota profiling of cows milk with and without traditional fermentation Data processed with dada2 pipeline on Ilifu

Both read trim strategies and taxonomic DB used will be considered to try and improve species-level resolution compar... Katie Lennard

11:36 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #90: QC of aligned reads

When the differential expression analysis was run, the samples were clustering in two distinct groups.
Looking in... Jon Ambler

11:28 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #92 (In Progress): Differential expression analysis

A list of the top differentially expressed genes have been created for the tissue data set.
This set includes gene... Jon Ambler

09:22 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu

Thys Potgieter

09:16 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #85 (Resolved): MaxQuant run of raw proteomics data

Thys Potgieter