Redmine

01/25/2023

11:56 AM Variant calling: detecting SNPs in WGS data relative to H37Rv Document: BST request questionnaire

Ephie Geza

11:56 AM Variant calling: detecting SNPs in WGS data relative to H37Rv CBIO_SioinfServiceRequestMthawelanga.docx

Ephie Geza

11:53 AM Variant calling: detecting SNPs in WGS data relative to H37Rv Support #145: Follow up on the feedback of the 17 November 2022 meeting

Hi Mtha,
Kindly update us on the original strains you were supposed to get from Tasha and the three (3) samples wh... Ephie Geza

01/24/2023

05:27 PM Metagenomic sequencing of CSF samples AnaGroups_RNAseq_V1_2.xlsx

Our v1 and v2 are based on the Analysis groups as detailed in this file Ephie Geza

05:16 PM Metagenomic sequencing of CSF samples dge_v0_2.pdf

v0 of the RNA seq and downstream analysis. Results were not significant Ephie Geza

05:03 PM Metagenomic sequencing of CSF samples dge_v2.pdf

v2 grouped the remaining 24 patients into three groups: 1, 2 and 3 Ephie Geza

05:00 PM Metagenomic sequencing of CSF samples dge_v1.pdf

This file is the version 1 (v1) of the RNA seq and downstream analysis. The analysis considered eight patients groups. Ephie Geza

01/16/2023

05:57 PM Serratia & GBS single isolate seq Manuscript revisions

From Clinton:
'Just wanted to touch base and let you know we got our reviewer feedback for the Serratia paper. The... Katie Lennard