Activity
From 05/07/2023 to 06/05/2023
05/19/2023
- 02:42 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 6.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- scRNA seq of the skin: cluster annotation as reference for slideseq
- 02:39 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 6.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Cell type identification: Exploring RCTD from spacexr package
05/18/2023
- 11:45 AM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 9.50 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Investigating cell type identification using slide seq data and documenting the preliminary findings (dimension reduc...
- 11:38 AM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 1.50 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Data preprocessing, normalization, dimension reduction, clustering and visualization
05/12/2023
- 12:00 PM Variant calling using whole exome sequencing (WES) data. 40.00 hours (Project: Variant calling using whole exome sequencing (WES) data. )
05/11/2023
- 04:27 PM Variant calling: detecting SNPs in WGS data relative to H37Rv 22.00 hours (Bug #156 (New): Debugging the bacterial variant calling pipeline)
- 04:02 PM Variant calling: detecting SNPs in WGS data relative to H37Rv 1.50 hour (Support #148 (New): Meeting: Results and discussion for 91_S91 (sample_1), 92_S92 (sample_2) and 93_S93)
- 03:42 PM Variant calling: detecting SNPs in WGS data relative to H37Rv 2.00 hours (Support #145 (New): Follow up on the feedback of the 17 November 2022 meeting)
- 03:38 PM Variant calling: detecting SNPs in WGS data relative to H37Rv 1.00 hour (Support #140 (New): Project for Mthawelanga on Redmine)
- 03:12 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 1.00 hour (Support #149 (New): Adding Nyaradzo Chigorimbo-Tsikiwa on Redmine)
- 03:09 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 4.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Initializing an renv project
- 03:00 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 24.00 hours (Support #153 (New): Data exploration)
- 02:50 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 14.00 hours (Support #152 (New): Understanding the Slide seq data and analysis pipelines)
- 02:44 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 0.45 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Discussing how to relax the gene filtering in FindMarkers function
- 12:41 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 1.00 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Discussing preliminary findings
- 12:39 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 1.00 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Meeting to discuss the reference single-cell of skin and spatial data
- 12:27 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 1.00 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Meeting to discuss the project proposal details and data
- 08:53 AM Testing Redmine project features 1.00 hour (Project: Testing Redmine project features)
05/10/2023
- 04:08 PM Testing Redmine project features 2.00 hours (Support #151 (New): Testing time records)
Also available in: Atom