Gerrit Botha
- Registered on: 10/13/2017
- Last connection: 03/31/2025
Issues
- Assigned issues: 9
- Reported issues: 19
Projects
- Testing Redmine project features (Manager, 01/26/2018)
- Setting up the BST helpdesk (Developer, 09/09/2021)
- Testing human WGS alignment, calling and joint calling on DRAGEN hardware (Reporter, 03/13/2018)
- Setting up a portable RNA-Seq pipeline for CBIO (Developer, 03/14/2018)
- Setting up a portable metagenome assembly pipeline for CBIO (Developer, Reporter, 03/26/2018)
- Setting up a portable 16S rDNA pipeline for CBIO (Developer, 05/04/2018)
- HIV latency transcriptomics of resting CD4+ T cells (Manager, 07/05/2018)
- Pathogen outbreak study - Pseudomonas single isolate WGS (Developer, Reporter, 01/31/2019)
- Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) (Reporter, 04/24/2019)
- Metagenomic sequencing of CSF samples (Developer, 12/06/2021)
- Variant calling: detecting SNPs in WGS data relative to H37Rv (Reporter, 03/28/2022)
- Analysing the sudden unexpected death of an infant through molecular autopsy and co-segregation analysis (Developer, 05/30/2022)
- Variant calling using whole exome sequencing (WES) data. (Reporter, 08/04/2022)
- The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection (Developer, Reporter, 05/04/2023)
- Lactobacillus iners MAGs: Genital inflammation in adolescent women (Developer, 06/22/2023)
- Genetics factors associated with resistance to Mtb infection in healthcare workers (Developer, 09/05/2023)
- Transcriptomic approach on the early development of severe asthma (Developer, 09/20/2023)
- Investigating the prevalence of Helicobacter Pylori in South Africa (Reporter, 12/11/2023)
- Investigating the role of the vaginal microbiome in genital inflammation (Developer, 12/03/2024)
Activity
01/17/2024
- 03:15 PM Genetics factors associated with resistance to Mtb infection in healthcare workers Support #169 (New): Update so far and way forward
- What have been done
1. We have joint genotyped the into a combined gVCFS
2. We have annotated the VCFS with VEP to ...
10/16/2023
- 09:51 AM Genetics factors associated with resistance to Mtb infection in healthcare workers Support #165 (New): Upload gVCFs and VCFS
- gVCFs and VCFs can be found here: /cbio/projects/029/data (46 samples)
06/22/2023
- 09:47 AM Lactobacillus iners MAGs: Genital inflammation in adolescent women Support #159: Adding Adijat to the project
- Ok I've added her
05/12/2023
- 12:00 PM Variant calling using whole exome sequencing (WES) data. 40.00 hours (Project: Variant calling using whole exome sequencing (WES) data. )
05/11/2023
- 08:53 AM Testing Redmine project features 1.00 hour (Project: Testing Redmine project features)
05/10/2023
- 04:08 PM Testing Redmine project features Support #151: Testing time records
- I spend 2 hours
- 04:08 PM Testing Redmine project features 2.00 hours (Support #151 (New): Testing time records)
- 04:05 PM Testing Redmine project features Support #151 (New): Testing time records
- This is just a test
05/04/2023
- 12:11 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection Support #149: Adding Nyaradzo Chigorimbo-Tsikiwa on Redmine
- Hi Ephie,
I've added Nyari to Redmine and subscribed her to this project.
Regards,
Gerrit
11/18/2022
- 11:28 AM Variant calling: detecting SNPs in WGS data relative to H37Rv Support #145: Follow up on the feedback of the 17 November 2022 meeting
- Thank you Ephie, let me know if there is anything I can help with.
Regards,
Gerrit
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