Variant calling: detecting SNPs in WGS data relative to H37Rv

Project title
Variant calling: detecting SNPs in WGS data relative to H37Rv

People involved
Principal investigator: A/Prof Anna Coussens
Coinvestigators: Prof Robert Wilkinson and Dr Anastasia Koch
Support request by: Mthawelanga Ndengane
Bioinformatics support team: Ephifania Geza and Gerrit Botha

Short description of project
Data analysis involve the mapping and alignment, SNP-calling, and detection of SNPs (relative to H37Rv) in WGS for 6 strains.

Objectives
Mapping and alignment, SNP-calling, and detection of SNPs (relative to H37Rv) in WGS for 6 strains