Redmine

• Registered on: 02/12/2018

Issues

• Assigned issues: 0
• Reported issues: 0

Projects

• Setting up the BST helpdesk (Reporter, 03/15/2018)
• Testing human WGS alignment, calling and joint calling on DRAGEN hardware (Reporter, 03/13/2018)
• Setting up a portable RNA-Seq pipeline for CBIO (Reporter, 03/14/2018)
• Setting up a portable metagenome assembly pipeline for CBIO (Reporter, 03/26/2018)
• Setting up a portable 16S rDNA pipeline for CBIO (Reporter, 05/04/2018)
• The effect of tadpole-tail blastema extract on rhabdomyosarcoma (Manager, 07/05/2018)
• HIV latency transcriptomics of resting CD4+ T cells (Manager, 07/05/2018)
• RNAseq analysis of Folliculitis keloidalis nuchae (Manager, 07/26/2018)
• TB Biomarkers Analysis (Lipidomics) (Manager, 10/01/2018)
• TB Biomarkers Analysis (Lipidomics) Zandile (Manager, 11/26/2018)
• Pathogen outbreak study - Pseudomonas single isolate WGS (Developer, Reporter, 01/31/2019)
• Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) (Reporter, 04/24/2019)
• The impact of fire and herbivores on soil microbes (Manager, 06/24/2019)
• Transcriptomic analysis of CNS TB (Manager, 12/04/2019)
• RNAseq blood profiling of liver fibrosis during schistosomiasis (Manager, 12/05/2019)
• MTB CRISPRi-seq (Manager, 01/21/2020)
• M. smegmatis variant calling pipeline (Reporter, 12/10/2021)
• Transcriptomic profiling of HIV exposure in infant Treg cells (Manager, 05/25/2020)
• COVID-19 arrays (Manager, 05/19/2021)
• Single isolate pathogen sequencing (Manager, 05/19/2021)
• Serratia & GBS single isolate seq (Manager, 11/09/2021)
• Vaginal 16S foetal alcohol spectrum disorder (Manager, 11/09/2021)
• Metagenomic sequencing of CSF samples (Reporter, 12/06/2021)
• schistosomiasis metagenomics profiling (Manager, 03/17/2022)
• Variant calling: detecting SNPs in WGS data relative to H37Rv (Reporter, 03/28/2022)
• The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection (Reporter, 05/04/2023)
• Transcriptomic approach on the early development of severe asthma (Reporter, 09/20/2023)
• Investigating the prevalence of Helicobacter Pylori in South Africa (Reporter, 12/11/2023)