Project

General

Profile

Overview

Project title
HIV latency transcriptomics of resting CD4+ T cells

People involved
Principal investigator : Walter Nevondo
Bioinformatics support team: Katie Lennard

Short description of project
Despite anti-retroviral therapy HIV persists in a latent form of replication‐competent genome in anatomical and cellular reservoirs. This study has the following specific questions:

  1. What is the permissive cellular environment that facilitates HIV-1 productive and latent infection?
  2. What are the cellular regulatory mechanisms of HIV-1 latency maintenance and persistence?
    • Is latency maintained through global or cell-specific mechanisms?
    • Are there other novel mechanisms responsible for HIV-latency maintenance?
  3. Does HIV-1 infected resting CD4+ T cells show specific transcriptional signature and is there any surface marker unique to these cells?

Objectives
XXX

Issue tracking

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Spent time

3.00 hours

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Latest news

Results from run 1 sent to Walter - QC issues detected
The 3 samples sent to us for the first run were processed on Ilifu
Added by Katie Lennard almost 6 years ago

Raw files received from Walter Nevondo for 1st dataset
I received raw .fastq data for 3 samples (6 files R1/R2) from Walter via Google drive
Added by Katie Lennard about 6 years ago

Meeting with Walter
Update on sequencing progress and project overview
Added by Katie Lennard about 6 years ago

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