Overview
Project title
HIV latency transcriptomics of resting CD4+ T cells
People involved
Principal investigator : Walter Nevondo
Bioinformatics support team: Katie Lennard
Short description of project
Despite anti-retroviral therapy HIV persists in a latent form of replicationācompetent genome in anatomical and cellular reservoirs. This study has the following specific questions:
- What is the permissive cellular environment that facilitates HIV-1 productive and latent infection?
- What are the cellular regulatory mechanisms of HIV-1 latency maintenance and persistence?
- Is latency maintained through global or cell-specific mechanisms?
- Are there other novel mechanisms responsible for HIV-latency maintenance?
- Does HIV-1 infected resting CD4+ T cells show specific transcriptional signature and is there any surface marker unique to these cells?
Objectives
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Latest news
Results from run 1 sent to Walter - QC issues detected
The 3 samples sent to us for the first run were processed on Ilifu
Raw files received from Walter Nevondo for 1st dataset
I received raw .fastq data for 3 samples (6 files R1/R2) from Walter via Google drive
Meeting with Walter
Update on sequencing progress and project overview
Members
Manager: Gerrit Botha, Katie Lennard, Nicky Mulder