Redmine

05/19/2023

02:42 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 6.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)

scRNA seq of the skin: cluster annotation as reference for slideseq Ephie Geza

02:39 PM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 6.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)

Cell type identification: Exploring RCTD from spacexr package Ephie Geza

05/18/2023

11:45 AM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 9.50 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)

Investigating cell type identification using slide seq data and documenting the preliminary findings (dimension reduc... Ephie Geza

11:38 AM The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 1.50 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)

Data preprocessing, normalization, dimension reduction, clustering and visualization Ephie Geza

05/12/2023

12:00 PM Variant calling using whole exome sequencing (WES) data. 40.00 hours (Project: Variant calling using whole exome sequencing (WES) data. )

Gerrit Botha