Feature #52
Cleaning up current pipeline outputs for easier management downstream, finalise protocol of metadata sharing between sequencing, pipeline processing and statistical analysis
Description
Gerrit Botha, Nicki Tiffin and Ray Moholisa had a discussion with Mark Nicol and Sugnet Lubbe regarding their needs in terms of support with statistical modeling of their current 16S data. It turned out that they need assistance with that but also that some data cleaning and better protocol for handling metadata between sequencing, pipeline processing and sharing with Sugnet needs to be finalised.
History
Updated by Gerrit Botha almost 7 years ago
Hi Samson,
I've uploaded the document Sugnet has shared with me regarding the issues that she is currently experiencing with getting data ready before even getting to the analysis. Shantelle has also added her comments to the document. I've uploaded it as a Google doc here and given you permissions to edit.
As we discussed in yesterday's meeting will you be able to comment directly in the document (maybe in different color) what our suggestions is to get things resolved. Once we are happy with everything I will let Sugnet/Shantelle/Mark know if that will work for them or if we need to meet to discuss further. I will share our finalised document directly with them.
Gerrit
Updated by Samson Kilaza almost 7 years ago
Hi Gerrit,
I have finished commenting on the google document you have shared.
Samson
Updated by Gerrit Botha almost 7 years ago
Thank you Samson, I will have a look and get back to you.
Gerrit
Updated by Gerrit Botha almost 7 years ago
Hi Samson,
I started looking at the document and added some comments on request. Can you please have a look.
Gerrit
Updated by Gerrit Botha almost 7 years ago
Ok Samson I've asked Shantelle also to give some input in the document. Once she has done all of us can maybe meet and finalise how we will resolve things in code and a better protocol. Will let you know.