Setting up a portable metagenome assembly pipeline for CBIO

04/20/2018

03:35 PM Support #38 (New): How to download SRA files to hex

How to download input files (testdata) from SRA to hex:
Use sra-tools installed on hex (activate by doing ‘load modu... Katie Lennard

02:19 PM ismej201625a.pdf

Paper sent by Ulas: their study to demonstrate pipeline we'll be using Katie Lennard

02:18 PM Genome Res.-2013-Sharon-111-20.pdf

Paper sent by Ulas: a study that used the pipeline we'll be using Katie Lennard

04/11/2018

02:26 PM Support #27: What we already know and have setup

Ok Gerrit Botha

02:25 PM Support #27: What we already know and have setup

No problem Gerrit. No, Jai only got as far as asking Andrew to install the necessary software.
Katie Lennard

02:22 PM Support #27: What we already know and have setup

Hi Katie,
I picked up this message from you on the bst-redmine@cbio.uct.ac.za account.
*"Gerrit this was wit... Gerrit Botha

03/26/2018

03:38 PM Support #27: What we already know and have setup

Hi Katie,
Can you please add any info you have on the setup you have at Hex?
Also for who did you plan to setup... Gerrit Botha

03:36 PM Support #27 (New): What we already know and have setup

Jairam Lingappa vissited Heather's group last year and was planning to setup an metagenome assembly pipeline on Hex. ... Gerrit Botha