Setting up a portable metagenome assembly pipeline for CBIO

04/25/2018

03:24 PM Support #27: What we already know and have setup

I met the developer of this workflow: https://github.com/alesssia/YAMP at the Nextflow workshop last year. I do not t... Gerrit Botha

04/20/2018

03:35 PM Support #38 (New): How to download SRA files to hex

How to download input files (testdata) from SRA to hex:
Use sra-tools installed on hex (activate by doing ‘load modu... Katie Lennard

02:19 PM ismej201625a.pdf

Paper sent by Ulas: their study to demonstrate pipeline we'll be using Katie Lennard

02:18 PM Genome Res.-2013-Sharon-111-20.pdf

Paper sent by Ulas: a study that used the pipeline we'll be using Katie Lennard

04/11/2018

02:26 PM Support #27: What we already know and have setup

Ok Gerrit Botha

02:25 PM Support #27: What we already know and have setup

No problem Gerrit. No, Jai only got as far as asking Andrew to install the necessary software.
Katie Lennard

02:22 PM Support #27: What we already know and have setup

Hi Katie,
I picked up this message from you on the bst-redmine@cbio.uct.ac.za account.
*"Gerrit this was wit... Gerrit Botha