Wiki¶

Data location¶

The data was transferred using Globus connect and Ilifu's Globus endpoint from a PC setup in cbio to Ilifu:

/cbio/users/katie/Nono/metagenomics


The data has already been cleaned and decontaminated (human) by BGI, who have also performed a full analysis on the data (see files section)

The full BGI results can be found together with the cleaned reads on Ilifu.

YAMP pipeline update¶

The YAMP pipeline was updated with the latest metaphlan DB, downloaded from https://zenodo.org/record/4629921#.Yji3YxNBzOR