Activity
From 05/05/2023 to 06/03/2023
05/19/2023
- 02:42 PM 6.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- scRNA seq of the skin: cluster annotation as reference for slideseq
- 02:39 PM 6.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Cell type identification: Exploring RCTD from spacexr package
05/18/2023
- 11:45 AM 9.50 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Investigating cell type identification using slide seq data and documenting the preliminary findings (dimension reduc...
- 11:38 AM 1.50 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Data preprocessing, normalization, dimension reduction, clustering and visualization
05/11/2023
- 03:12 PM 1.00 hour (Support #149 (New): Adding Nyaradzo Chigorimbo-Tsikiwa on Redmine)
- 03:09 PM 4.00 hours (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Initializing an renv project
- 03:00 PM 24.00 hours (Support #153 (New): Data exploration)
- 02:50 PM 14.00 hours (Support #152 (New): Understanding the Slide seq data and analysis pipelines)
- 02:44 PM 0.45 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Discussing how to relax the gene filtering in FindMarkers function
- 12:41 PM 1.00 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Discussing preliminary findings
- 12:39 PM 1.00 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Meeting to discuss the reference single-cell of skin and spatial data
- 12:27 PM 1.00 hour (Project: The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection)
- Meeting to discuss the project proposal details and data
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