Redmine

08/05/2019

02:06 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization

Thys Potgieter

07/19/2019

06:38 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization

1) configurable normalization method (eg median, quantiles)
2) configurable imputation method (eg bayes PCA, KNN)
3... Thys Potgieter

07/15/2019

11:37 AM Pathogen outbreak study - Pseudomonas single isolate WGS Check coverage cutoffs for SNP analysis

SNP analysis is done with freebayes (on quality trimmed and filtered reads) with default settings ( -C 2 -min_coverag... Katie Lennard