Activity

From 06/14/2019 to 07/13/2019

02:12 PM Microbiota profiling of cows milk with and without traditional fermentation Data processed with dada2 pipeline on Ilifu: Both read trim strategies and taxonomic DB used will be considered to try and improve species-level resolution compar... Katie Lennard
11:36 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #90: QC of aligned reads: When the differential expression analysis was run, the samples were clustering in two distinct groups.
Looking in... Jon Ambler
11:28 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #92 (In Progress): Differential expression analysis: A list of the top differentially expressed genes have been created for the tissue data set.
This set includes gene... Jon Ambler
09:22 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu: Thys Potgieter
09:16 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #85 (Resolved): MaxQuant run of raw proteomics data: Thys Potgieter

01:02 PM Microbiota profiling of cows milk with and without traditional fermentation Meetin with Pieter and Mike to discuss analysis: Mainly they are looking for improved species-level resolution with a few specific species they are hoping to see. I w... Katie Lennard

05:21 PM The impact of fire and herbivores on soil microbes dada2 testrun on HPC successfull: Config files edited by user (on HPC copy of repo). https://github.com/kviljoen/16S-rDNA-dada2-pipeline/blob/master/co... Katie Lennard

04:42 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #92: Differential expression analysis: Including this into the first python script so merging and splitting by experiment into the required files takes plac... Jon Ambler
04:40 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #92: Differential expression analysis: Writing a script for this in python for repeatability. Jon Ambler
04:38 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #92 (Resolved): Differential expression analysis: Conduct differential expression analysis on the samples.
The experiments are outlined in the RNAseq_analysis_8_Ma... Jon Ambler

12:53 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #81 (Resolved): Full run on ilifu of RNA seq pipeline: The last 8 samples ran successfully, it was the max runtime that was an issue for the genebody_coverage process where... Jon Ambler

02:27 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #90 (In Progress): QC of aligned reads: The QC looks good, but there are a few samples with results that warrant further investigation. Some samples also had... Jon Ambler
11:34 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #90 (Resolved): QC of aligned reads: A QC report was generated by MultiQC. All samples need to be checked to make sure there were no problems and the data... Jon Ambler
11:32 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #81 (In Progress): Full run on ilifu of RNA seq pipeline: The full run completed, but 8 processed failed.The Nextflow report claims that the run was successful, despite the er... Jon Ambler

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