Redmine

02/14/2020

01:14 PM M. smegmatis variant calling pipeline Support #113: QC of files

After the pipeline was set up, the initial runs failed, and upon inspection of the fastq files it appears that they a... Jon Ambler

01:09 PM M. smegmatis variant calling pipeline Support #113 (New): QC of files

Running the fastq files through QC to determine if the quality is acceptable.
Using MultiQC pipeline Jon Ambler

01:12 PM M. smegmatis variant calling pipeline Support #114 (In Progress): Preparation of the reusable pipeline

The group requested that the pipeline be reusable.
For this, I am modifying existing Nextflow pipelines to provide... Jon Ambler

01:08 PM M. smegmatis variant calling pipeline Support #107 (Closed): Downloading data from GenoHub

Data moved to Ilifu
Location /cbio/users/jambler/mel_msmeg_data Jon Ambler

02/12/2020

11:40 AM MTB CRISPRi-seq Meeting with Mandy to discuss data transfer and analyses

I helped Mandy to download her data (SFTP .fastq files from public site at Crick). Some of the files are controls (~5... Katie Lennard