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Support #152

Understanding the Slide seq data and analysis pipelines

Added by Ephie Geza almost 2 years ago. Updated almost 2 years ago.

Status:
New
Priority:
High
Assignee:
-
Start date:
04/04/2023
Due date:
04/12/2023
% Done:

100%

Estimated time:
10.00 h
Spent time:
14.00 h

Description

This is to clarify whether single-cell RNA for the skin should be done or we use it as reference for slide seq analysis.

History

#1

Updated by Ephie Geza almost 2 years ago

  • Subject changed from Meeting to discuss the reference single-cell of skin and spatial data to Understanding the Slide seq data and analysis pipelines
  • Due date changed from 03/17/2023 to 04/12/2023
  • Start date changed from 03/17/2023 to 04/04/2023
  • Estimated time changed from 1.00 h to 10.00 h
  1. Started by investigating the ssHippo data from the SeuratData package in R
    • the data
    • the code upto the creation of the Seurat object.
  2. Manipulate the slide seq input data to a format similar to ssHippo

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