Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN)

06/18/2019

02:27 PM 2.00 hours (Support #90 (Resolved): QC of aligned reads)

Initial overview Jon Ambler

11:32 AM 8.00 hours (Support #81 (Resolved): Full run on ilifu of RNA seq pipeline)

Multiple parameters had to be changed with the genebody_coverage process taking a long time to run. Jon Ambler

06/05/2019

10:17 AM 2.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Failing unit tests for mqmetaproteomics fixed Thys Potgieter

06/04/2019

05:54 PM 3.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

Modifications to docker container so that it will run with singularity, git README added: https://github.com/uct-cbio... Thys Potgieter

06/01/2019

02:13 PM 1.00 hour (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)

docker container pushed to https://cloud.docker.com/repository/docker/thyscbio/mqmetaproteomics, interpro data downlo... Thys Potgieter

05/31/2019

11:10 AM 1.00 hour (Support #85 (Resolved): MaxQuant run of raw proteomics data)

MaxQuant run configured and started Thys Potgieter

05/21/2019

12:56 PM 4.00 hours (Support #82 (Resolved): Preliminary analysis of Proteome identification data )

Slides created of analysis results Thys Potgieter

05/20/2019

08:37 PM 6.00 hours (Support #82 (Resolved): Preliminary analysis of Proteome identification data )

Differential abuadance analysis and gene set enrichment scripts modified for CPGR protein identification data, output... Thys Potgieter