Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN)

06/24/2019

04:42 PM Support #92: Differential expression analysis

Including this into the first python script so merging and splitting by experiment into the required files takes plac... Jon Ambler

04:40 PM Support #92: Differential expression analysis

Writing a script for this in python for repeatability. Jon Ambler

04:38 PM Support #92 (Resolved): Differential expression analysis

Conduct differential expression analysis on the samples.
The experiments are outlined in the RNAseq_analysis_8_Ma... Jon Ambler

06/19/2019

12:53 PM Support #81 (Resolved): Full run on ilifu of RNA seq pipeline

The last 8 samples ran successfully, it was the max runtime that was an issue for the genebody_coverage process where... Jon Ambler

06/18/2019

02:27 PM Support #90 (In Progress): QC of aligned reads

The QC looks good, but there are a few samples with results that warrant further investigation. Some samples also had... Jon Ambler

11:34 AM Support #90 (Resolved): QC of aligned reads

A QC report was generated by MultiQC. All samples need to be checked to make sure there were no problems and the data... Jon Ambler

11:32 AM Support #81 (In Progress): Full run on ilifu of RNA seq pipeline

The full run completed, but 8 processed failed.The Nextflow report claims that the run was successful, despite the er... Jon Ambler

06/01/2019

02:10 PM Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu

Metaproteomic analysis docker container pulled to ilifu and converted to singularity image, latest InterPro scan inst... Thys Potgieter