Activity
From 07/01/2019 to 07/30/2019
07/25/2019
- 01:34 PM 2.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )
- Exclude samples from downstream analysis using config file
07/23/2019
- 02:07 PM 4.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )
- Boxplots for peptide identifications, scatterplots of sample protein intensities against median (QC).
07/19/2019
- 06:39 PM 4.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )
- Bayes PCA tested, configurable normalization method in pipeline. Box plots improved to exclude outliers in plots
07/02/2019
- 11:36 AM 3.00 hours (Support #90 (Resolved): QC of aligned reads)
- 11:28 AM 6.00 hours (Support #92 (Resolved): Differential expression analysis)
- 09:21 AM 2.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)
- Methods summary presentation created and sent to Relebohile
- 09:21 AM 2.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)
- Data analyzed, experimental design file created for cells and tissues separately.
- 09:19 AM 6.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)
- Bug fixes and unit tests for mqmetaproteomics pipeline
- 09:18 AM 6.00 hours (Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu)
- Quality control - samples less than 1 percent assigned spectra excluded. normalization and imputation methods tested.
- 09:16 AM 2.00 hours (Support #85 (Resolved): MaxQuant run of raw proteomics data)
- MaxQuant run restarted, experiment names added
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