Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN)

08/08/2019

05:45 PM 2.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )

Contaminant versus total protein content visualization figure (Added to QC component of pipeline) Thys Potgieter

08/05/2019

02:06 PM 3.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )

Runs for cells and tissues completed, QC figures added to meeting presentation, output moved to research drive. Thys Potgieter

02:04 PM 3.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )

Gene and protein ID added to differential abundance analysis output, unit tests. Thys Potgieter

07/25/2019

01:34 PM 2.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )

Exclude samples from downstream analysis using config file Thys Potgieter

07/23/2019

02:07 PM 4.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )

Boxplots for peptide identifications, scatterplots of sample protein intensities against median (QC). Thys Potgieter

07/19/2019

06:39 PM 4.00 hours (Feature #93 (Resolved): Improve normalization and imputaiton of tissue sample proteomics data and visualization )

Bayes PCA tested, configurable normalization method in pipeline. Box plots improved to exclude outliers in plots Thys Potgieter