Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN)

10/04/2019

01:30 PM Support #90 (Resolved): QC of aligned reads

The distinction appears to be as a result of tissue vs cell culture samples. Jon Ambler

01:29 PM Support #101 (New): Secondary analysis: Transcription factor and pathway enrichment

Now that we have groups of candidate genes, we want to find out which genes will function better as biomarkers.
T... Jon Ambler

01:25 PM Support #100 (Resolved): Time seres analysis

A python script to profile the time series data was created.
This script takes in the expression info from the dif... Jon Ambler

01:21 PM Support #100 (In Progress): Time seres analysis

Time series analysis was done using deseq2, and saved as an R script.
Exported the results to csv files Jon Ambler

01:19 PM Support #100 (Resolved): Time seres analysis

Looking at the time series data for the samples, we needed to compare the expression of the different conditions (FKN... Jon Ambler

01:19 PM Support #92 (Resolved): Differential expression analysis

Jon Ambler

01:17 PM Support #92: Differential expression analysis

Initial differential analysis completed, comparing all groups in the tissue data set.
Results handed over. Jon Ambler

09/16/2019

12:28 AM Feature #98 (Closed): Sample processing with MetaMorpheus

Open PTM search with MetaMorpheus to inform MaxQuant search settings Thys Potgieter