Activity
From 09/29/2019 to 10/28/2019
10/28/2019
- 01:33 PM Feature #104 (Resolved): Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added.
- a single excel file with protein and mRNA data for all time points, including mean protein intensity per group, p-val...
10/22/2019
- 02:20 PM Feature #103 (Resolved): Median group intensity added to output for visualization of proteomics target expression profiles
- log2FC of iBAQ intensity, median values in differential abundance output tables (in addition to Fold Change). For dat...
10/04/2019
- 01:30 PM Support #90 (Resolved): QC of aligned reads
- The distinction appears to be as a result of tissue vs cell culture samples.
- 01:29 PM Support #101 (New): Secondary analysis: Transcription factor and pathway enrichment
- Now that we have groups of candidate genes, we want to find out which genes will function better as biomarkers.
T... - 01:25 PM Support #100 (Resolved): Time seres analysis
- A python script to profile the time series data was created.
This script takes in the expression info from the dif... - 01:21 PM Support #100 (In Progress): Time seres analysis
- Time series analysis was done using deseq2, and saved as an R script.
Exported the results to csv files - 01:19 PM Support #100 (Resolved): Time seres analysis
- Looking at the time series data for the samples, we needed to compare the expression of the different conditions (FKN...
- 01:19 PM Support #92 (Resolved): Differential expression analysis
- 01:17 PM Support #92: Differential expression analysis
- Initial differential analysis completed, comparing all groups in the tissue data set.
Results handed over.
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