Activity

From 03/04/2018 to 04/02/2018

04:42 PM Setting up the BST helpdesk Feature #29: Create list of research groups to appear for ticket submission.: The divisions/research groups we have worked with before not in the above the list should definitely be added. A brea... Gerrit Botha
04:15 PM Setting up the BST helpdesk Feature #29 (In Progress): Create list of research groups to appear for ticket submission.: Jon Ambler
04:15 PM Setting up the BST helpdesk Feature #29 (Closed): Create list of research groups to appear for ticket submission.: A list of research groups to be included in the ticketing system needs to be agreed upon.
This will serve to keep... Jon Ambler
04:18 PM Setting up the BST helpdesk Feature #12 (In Progress): Add more info in knowledge base categories: At the meeting, the person responsible for each category was assigned. Team members are currently adding the informat... Jon Ambler
04:12 PM Setting up the BST helpdesk Feature #11 (Resolved): Add email system: Email system is working, emails to the UCT outlook server was being blocked because the server address and email was ... Jon Ambler
04:11 PM Setting up the BST helpdesk Feature #11 (In Progress): Add email system: Jon Ambler

05:41 PM Setting up the BST helpdesk Feature #11: Add email system: Email address should be bst-helpdesk@cbio.uct.ac.za Gerrit Botha
03:38 PM Setting up a portable metagenome assembly pipeline for CBIO Support #27: What we already know and have setup: Hi Katie,
Can you please add any info you have on the setup you have at Hex?
Also for who did you plan to setup... Gerrit Botha
03:36 PM Setting up a portable metagenome assembly pipeline for CBIO Support #27 (New): What we already know and have setup: Jairam Lingappa vissited Heather's group last year and was planning to setup an metagenome assembly pipeline on Hex. ... Gerrit Botha

01:22 PM Testing human WGS alignment, calling and joint calling on DRAGEN hardware Support #23: Test the DRAGEN GATK best practice workflow on a WGS GiaB sample: Ok Gerrit Botha
11:02 AM Testing human WGS alignment, calling and joint calling on DRAGEN hardware Support #23: Test the DRAGEN GATK best practice workflow on a WGS GiaB sample: Hi Gerrit,
I'm just waiting on the CPGR to give me a time to come in so they can show me the system.
Jon Ambler

12:02 PM Testing human WGS alignment, calling and joint calling on DRAGEN hardware Support #23: Test the DRAGEN GATK best practice workflow on a WGS GiaB sample: Hi Jon,
Just want to check how it is going with this and if you need any help?
Regards,
Gerrit Gerrit Botha

04:39 PM Setting up a portable RNA-Seq pipeline for CBIO Support #24: Setting up the NGI-RNAseq pipeline on UCT Hex: Katie I've talked to Chris Fields he is working with Jenny. He will check if he can make their pipeline available. He... Gerrit Botha
03:07 PM Setting up a portable RNA-Seq pipeline for CBIO Support #25: Configure NGI-RNAseq pipeline to run on hex: Katie just a note. The section `singularity.cacheDir = "/scratch/DB/bio/singularity-containers` in our `config.txt` i... Gerrit Botha
02:55 PM Setting up a portable RNA-Seq pipeline for CBIO Support #25 (In Progress): Configure NGI-RNAseq pipeline to run on hex: Pertinent points for setup of NGI-RNAseq pipeline on UCT hex
*Main pipeline source code is at https://github.com/Sci... Katie Lennard

10:13 PM Setting up a portable RNA-Seq pipeline for CBIO Support #24 (New): Setting up the NGI-RNAseq pipeline on UCT Hex: Katie received a support request to analyse human RNA-Seq data. We do not have a pipeline ready for just pushing RNA-... Gerrit Botha

11:24 AM Testing human WGS alignment, calling and joint calling on DRAGEN hardware Support #23 (Resolved): Test the DRAGEN GATK best practice workflow on a WGS GiaB sample: We need to test [this workflow](http://edicogenome.com/pipelines/gatk-best-practices-workflow-on-dragen).
The samp... Gerrit Botha

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