Activity
From 04/01/2019 to 04/30/2019
04/29/2019
- 06:01 PM HIV latency transcriptomics of resting CD4+ T cells Results from run 1 sent to Walter - QC issues detected
- The multiqc report highlighted potential issues with sample and/or library prep. A large proportion of reads were < 1...
- 09:44 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #74: Uploading of data
- Started upload of the data to Ilifu.
Location:
/ceph/cbio/users/jambler
04/26/2019
- 10:52 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #74: Uploading of data
- Ok the private folder is there on Ilifu now.
04/25/2019
- 05:28 PM Infant stool metaproteome analysis Support #75 (Resolved): Taxonomic profiling using BLAST of identified proteins and peptides
- BLAST analysis of infant stool peptides and proteins, using the CHPC peptide BLAST pipeline.
- 04:57 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #73 (Resolved): Initial meeting
- Relebohile outlined the study design, and elaborated on the research questions they are seeking to answer.
We outlin... - 04:45 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #74: Uploading of data
I've requested to setup a POSIX group for this project (`cbio-002`) on Ilifu.
Jon for now you can move the data ...- 04:39 PM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #74 (Resolved): Uploading of data
- Getting data onto Ilifu
04/24/2019
- Support request form
- 11:42 AM Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) Support #73 (Closed): Initial meeting
- A meeting has been arranged for the 25/04/19 at 15:00 to discuss the project.
04/15/2019
- 12:01 PM HIV latency transcriptomics of resting CD4+ T cells Raw files received from Walter Nevondo for 1st dataset
- Processing has been delayed somewhat by the Nicol project. Will now start testing on this first dataset. Still expect...
04/09/2019
- 03:43 PM Pathogen outbreak study - Pseudomonas single isolate WGS Tychus pipeline ran successfully for E. coli and Pseudomonas
- The results can be found on Ilifu /ceph/cbio/users/katie/Nicol/ and have been transferred to medmicro's Athena server...
04/05/2019
- 01:46 PM Pathogen outbreak study - Pseudomonas single isolate WGS FastQC performed on E. coli and Pseudomonas raw data
- This was done on Ilifu using the nextflow pipeline https://github.com/kviljoen/16S_quick_QC.git
E. coli fastqc re...
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