Setting up a portable RNA-Seq pipeline for CBIO

03/15/2018

04:39 PM Support #24: Setting up the NGI-RNAseq pipeline on UCT Hex

Katie I've talked to Chris Fields he is working with Jenny. He will check if he can make their pipeline available. He... Gerrit Botha

03:07 PM Support #25: Configure NGI-RNAseq pipeline to run on hex

Katie just a note. The section `singularity.cacheDir = "/scratch/DB/bio/singularity-containers` in our `config.txt` i... Gerrit Botha

02:55 PM Support #25 (In Progress): Configure NGI-RNAseq pipeline to run on hex

Pertinent points for setup of NGI-RNAseq pipeline on UCT hex
*Main pipeline source code is at https://github.com/Sci... Katie Lennard

03/14/2018

10:13 PM Support #24 (New): Setting up the NGI-RNAseq pipeline on UCT Hex

Katie received a support request to analyse human RNA-Seq data. We do not have a pipeline ready for just pushing RNA-... Gerrit Botha