The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection

05/11/2023

03:34 PM Support #155 (New): Cell type identification (manual) and annotation

Use markers showing differential expression in each cluster to identify the cell types of each cluster Ephie Geza

03:16 PM Support #154 (New): Gene expression levels

To compile the genes and their expression levels. Rowsums of the expression data Ephie Geza

02:59 PM Support #153 (New): Data exploration

1. Data pre-processing
1. Data normalization and scaling
1. Dimension reduction and clustering Ephie Geza

02:50 PM Support #152: Understanding the Slide seq data and analysis pipelines

1. Started by investigating the ssHippo data from the SeuratData package in R
- the data
- the code upto the crea... Ephie Geza

12:34 PM Support #152 (New): Understanding the Slide seq data and analysis pipelines

This is to clarify whether single-cell RNA for the skin should be done or we use it as reference for slide seq analysis. Ephie Geza

05/04/2023

12:11 PM Support #149: Adding Nyaradzo Chigorimbo-Tsikiwa on Redmine

Hi Ephie,
I've added Nyari to Redmine and subscribed her to this project.
Regards,
Gerrit Gerrit Botha

11:51 AM Support #149 (New): Adding Nyaradzo Chigorimbo-Tsikiwa on Redmine

Hi Gerrit,
Kindly add Nyari on Redmine for **The impact of aSTI on the foreskin: spatial transcriptome and ex vivo... Ephie Geza

11:22 AM SLIDESEQ_request.docx

Ephie Geza