Activity
From 05/10/2019 to 06/08/2019
06/01/2019
- 02:10 PM Support #86 (Resolved): Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu
- Metaproteomic analysis docker container pulled to ilifu and converted to singularity image, latest InterPro scan inst...
05/31/2019
- 11:10 AM Support #85 (Resolved): MaxQuant run of raw proteomics data
- 98 RAW files processed with MaxQuant.
05/21/2019
05/17/2019
- 11:08 AM Support #82 (In Progress): Preliminary analysis of Proteome identification data
- 11:04 AM Support #82 (Resolved): Preliminary analysis of Proteome identification data
- Differential abundance analysis of preliminary data, PCA and heatmap generation.
05/16/2019
- 10:52 AM Support #81 (Resolved): Full run on ilifu of RNA seq pipeline
- Full run started on ilifu.
Output dir:
/ceph/cbio/users/jambler/full_run
Execute script used:
/ceph/cbio/use...
05/15/2019
- 09:28 AM Support #80 (Resolved): Renaming all files according to the experiments
- Files uploaded and renamed successfully.
05/14/2019
- 02:58 PM Support #80 (In Progress): Renaming all files according to the experiments
- To make sure files are named correctly, a testing set was created where the files contained their original names to m...
- 10:30 AM Support #78 (Resolved): Proteomics raw data uploaded to Blackburn Lab researchdata
05/13/2019
- 10:58 AM Support #80 (Resolved): Renaming all files according to the experiments
- Relebohile asked if the fastq files could be renamed according to the experimental conditions.
- 09:09 AM Support #79 (Resolved): Uploading new data from BGI
- 09:09 AM Support #79: Uploading new data from BGI
- Download completed, checksums passed.
Files moved to:
/ceph/cbio/users/jambler/Clean
checksum file for new sa... - 09:06 AM Support #77 (Resolved): Testing pipeline on subset of data
- Strandedness is correct, pipeline ready for full dataset.
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