Activity
From 04/15/2019 to 05/14/2019
05/14/2019
- 02:58 PM Support #80 (In Progress): Renaming all files according to the experiments
- To make sure files are named correctly, a testing set was created where the files contained their original names to m...
- 10:30 AM Support #78 (Resolved): Proteomics raw data uploaded to Blackburn Lab researchdata
05/13/2019
- 10:58 AM Support #80 (Resolved): Renaming all files according to the experiments
- Relebohile asked if the fastq files could be renamed according to the experimental conditions.
- 09:09 AM Support #79 (Resolved): Uploading new data from BGI
- 09:09 AM Support #79: Uploading new data from BGI
- Download completed, checksums passed.
Files moved to:
/ceph/cbio/users/jambler/Clean
checksum file for new sa... - 09:06 AM Support #77 (Resolved): Testing pipeline on subset of data
- Strandedness is correct, pipeline ready for full dataset.
05/09/2019
- 04:29 PM Support #79 (In Progress): Uploading new data from BGI
- Uploading the data directly to ilifu from the BGI ftp server.
- 04:28 PM Support #79 (Resolved): Uploading new data from BGI
- New samples on the BGI server need to be uploaded. Login details contained in an email.
- 04:26 PM Support #77 (In Progress): Testing pipeline on subset of data
- After dealing with some java issues, the pipeline ran through successfully.
The QC results look mostly good, just... - 03:12 PM Support #78 (Resolved): Proteomics raw data uploaded to Blackburn Lab researchdata
- Files uploaded to:
/mnt/researchdata/BLACKBURNLAB/2019/Collaborations/Thys/keloid
05/03/2019
- 09:55 AM Support #77 (Resolved): Testing pipeline on subset of data
- We are going to test the pipeline on a subset of the samples to make sure that the pipeline is functioning correctly....
- 09:40 AM Support #73 (Closed): Initial meeting
- 09:39 AM Support #74 (Resolved): Uploading of data
- All samples uploaded
1 sample failed checksum
Clean/GSH-FKN-002/CL100118345_L2_WHHUMyhwEACYRAA-588_2.fq.gz
re-upl...
04/29/2019
- 09:44 AM Support #74: Uploading of data
- Started upload of the data to Ilifu.
Location:
/ceph/cbio/users/jambler
04/26/2019
- 10:52 AM Support #74: Uploading of data
- Ok the private folder is there on Ilifu now.
04/25/2019
- 04:57 PM Support #73 (Resolved): Initial meeting
- Relebohile outlined the study design, and elaborated on the research questions they are seeking to answer.
We outlin... - 04:45 PM Support #74: Uploading of data
I've requested to setup a POSIX group for this project (`cbio-002`) on Ilifu.
Jon for now you can move the data ...- 04:39 PM Support #74 (Resolved): Uploading of data
- Getting data onto Ilifu
04/24/2019
- 11:42 AM Support #73 (Closed): Initial meeting
- A meeting has been arranged for the 25/04/19 at 15:00 to discuss the project.
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