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Hours: 178.60

Date User Activity Issue Comment Hours
06/19/2019 Jon Ambler Analysis Support #81: Full run on ilifu of RNA seq pipeline 1.00 Actions
06/18/2019 Jon Ambler Analysis Support #90: QC of aligned reads Initial overview 2.00 Actions
06/18/2019 Jon Ambler Analysis Support #81: Full run on ilifu of RNA seq pipeline Multiple parameters had to be changed with the genebody_coverage process taking a long time to run. 8.00 Actions
06/05/2019 Thys Potgieter Development Support #86: Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu Failing unit tests for mqmetaproteomics fixed 2.00 Actions
06/04/2019 Thys Potgieter Development Support #86: Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu Modifications to docker container so that it will run with singularity, git README added: https://github.com/uct-cbio/proteomics-pipelines/blob/master/singularity/mqmetaproteomics/README.md 3.00 Actions
06/01/2019 Thys Potgieter Development Support #86: Analyze keloid proteomics data with mqmetaproteomics pipeline on ilifu docker container pushed to https://cloud.docker.com/repository/docker/thyscbio/mqmetaproteomics, interpro data downloading to ilifu, singularity configuration in progress 1.00 Actions
05/31/2019 Thys Potgieter Analysis Support #85: MaxQuant run of raw proteomics data MaxQuant run configured and started 1.00 Actions
05/21/2019 Thys Potgieter Analysis Support #82: Preliminary analysis of Proteome identification data Slides created of analysis results 4.00 Actions
05/20/2019 Thys Potgieter Analysis Support #82: Preliminary analysis of Proteome identification data Differential abuadance analysis and gene set enrichment scripts modified for CPGR protein identification data, output obrtained 6.00 Actions
05/17/2019 Thys Potgieter Analysis Support #82: Preliminary analysis of Proteome identification data GO / KEGG Term mapping from UniProt downloaded, gene sets exported in R. 4.00 Actions
05/15/2019 Jon Ambler Sysadmin Support #80: Renaming all files according to the experiments 0.50 Actions
05/14/2019 Jon Ambler Sysadmin Support #80: Renaming all files according to the experiments 2.00 Actions
05/14/2019 Thys Potgieter Analysis Support #78: Proteomics raw data uploaded to Blackburn Lab researchdata Data uploaded to blacburn lab research drive: /mnt/researchdata/2019/Collaborations/Thys/keloid/ 2.00 Actions
05/13/2019 Jon Ambler Analysis Support #79: Uploading new data from BGI 1.00 Actions
05/13/2019 Jon Ambler Investigation Support #77: Testing pipeline on subset of data 2.00 Actions
05/09/2019 Jon Ambler Sysadmin Support #79: Uploading new data from BGI 1.00 Actions
05/09/2019 Jon Ambler Analysis Support #77: Testing pipeline on subset of data 6.00 Actions
05/03/2019 Jon Ambler Sysadmin Support #74: Uploading of data 1.00 Actions
04/29/2019 Jon Ambler Analysis Support #74: Uploading of data 0.10 Actions
04/25/2019 Jon Ambler Meeting Support #73: Initial meeting 1.00 Actions
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