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Hours: 1338.40

Project Date User Activity Issue Comment Hours
Transcriptomic approach on the early development of severe asthma 09/26/2023 Ephie Geza Analysis Choosing reference genome, nfcore/rnaseq set up and running 6.00 Actions
Transcriptomic approach on the early development of severe asthma 09/22/2023 Ephie Geza Transfer AWS data transfer: aws cli set up and data download 26 samples) 6.00 Actions
Transcriptomic approach on the early development of severe asthma 09/21/2023 Ephie Geza Transfer AWS data transfer: aws cli set up and data download (five samples) 4.00 Actions
Transcriptomic approach on the early development of severe asthma 09/20/2023 Ephie Geza Meeting Meeting to discuss the project details and data transfer 1.00 Actions
Whole genome sequencing of blowflies (Diptera: Calliphoridae) 06/27/2023 Ephie Geza Investigation Data preprocessing: FASTQC and MultiQC 1.00 Actions
Whole genome sequencing of blowflies (Diptera: Calliphoridae) 06/27/2023 Ephie Geza Meeting Discussing the Quality checks of the data and creating project on Redmine 1.00 Actions
Lactobacillus iners MAGs: Genital inflammation in adolescent women 06/21/2023 Ephie Geza Design Prokka singularity container, alignment module testing 7.00 Actions
Lactobacillus iners MAGs: Genital inflammation in adolescent women 06/21/2023 Ephie Geza Meeting Assembly module with Adijat 0.50 Actions
Lactobacillus iners MAGs: Genital inflammation in adolescent women 06/20/2023 Ephie Geza Design Debugging Tychus pipeline and testing the assembly module 7.00 Actions
Lactobacillus iners MAGs: Genital inflammation in adolescent women 06/19/2023 Ephie Geza Design Debugging the alignment docker image 3.00 Actions
Lactobacillus iners MAGs: Genital inflammation in adolescent women 05/19/2023 Ephie Geza Meeting Discussing project request details and data 0.50 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/19/2023 Ephie Geza Analysis scRNA seq of the skin: cluster annotation as reference for slideseq 6.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/18/2023 Ephie Geza Investigation Cell type identification: Exploring RCTD from spacexr package 6.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/17/2023 Ephie Geza Investigation Investigating cell type identification using slide seq data and documenting the preliminary findings (dimension reduction, clustering and visualization) 9.50 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/16/2023 Ephie Geza Analysis Data preprocessing, normalization, dimension reduction, clustering and visualization 1.50 Actions
Variant calling using whole exome sequencing (WES) data. 05/12/2023 Gerrit Botha Development 40.00 Actions
Whole genome sequencing of blowflies (Diptera: Calliphoridae) 05/11/2023 Ephie Geza Meeting Discuss the project request in detail 0.50 Actions
Variant calling: detecting SNPs in WGS data relative to H37Rv 05/11/2023 Ephie Geza Meeting Support #148: Meeting: Results and discussion for 91_S91 (sample_1), 92_S92 (sample_2) and 93_S93 1.50 Actions
Variant calling: detecting SNPs in WGS data relative to H37Rv 05/11/2023 Ephie Geza Investigation Support #145: Follow up on the feedback of the 17 November 2022 meeting 2.00 Actions
Variant calling: detecting SNPs in WGS data relative to H37Rv 05/11/2023 Ephie Geza Sysadmin Support #140: Project for Mthawelanga on Redmine 1.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/11/2023 Ephie Geza Sysadmin Support #149: Adding Nyaradzo Chigorimbo-Tsikiwa on Redmine 1.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/11/2023 Ephie Geza Analysis Support #153: Data exploration 24.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/11/2023 Ephie Geza Investigation Support #152: Understanding the Slide seq data and analysis pipelines 14.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 05/11/2023 Ephie Geza Meeting Discussing how to relax the gene filtering in FindMarkers function 0.45 Actions
Testing Redmine project features 05/11/2023 Gerrit Botha Investigation 1.00 Actions
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