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Hours: 1338.40

Project Date User Activity Issue Comment Hours
Testing Redmine project features 05/10/2023 Gerrit Botha Development Support #151: Testing time records 2.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 04/18/2023 Ephie Geza Design Initializing an renv project 4.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 04/18/2023 Ephie Geza Meeting Discussing preliminary findings 1.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 03/17/2023 Ephie Geza Meeting Meeting to discuss the reference single-cell of skin and spatial data 1.00 Actions
The impact of aSTI on the foreskin: spatial transcriptome and ex vivo HIV-1 infection 02/20/2023 Ephie Geza Meeting Meeting to discuss the project proposal details and data 1.00 Actions
Variant calling: detecting SNPs in WGS data relative to H37Rv 06/13/2022 Ephie Geza Investigation Bug #156: Debugging the bacterial variant calling pipeline 22.00 Actions
Serratia & GBS single isolate seq 11/09/2021 Katie Lennard Analysis Time spent up until 8 Nov 2021 29.00 Actions
Pathogen outbreak study - Pseudomonas single isolate WGS 11/04/2020 Katie Lennard Analysis Time spent up until 4/11/2020 2.50 Actions
Transcriptomic profiling of HIV exposure in infant Treg cells 11/04/2020 Katie Lennard Analysis Time spent up until 4/11/2020 58.00 Actions
Pathogen outbreak study - Pseudomonas single isolate WGS 07/21/2020 Katie Lennard Analysis Time spent up until 21/07/2020 7.00 Actions
MTB CRISPRi-seq 07/21/2020 Katie Lennard Development Time spent up until 21/07/2020 18.25 Actions
Microbiota profiling of cows milk with and without traditional fermentation 07/21/2020 Katie Lennard Analysis Time spent up until 21/07/2020 3.50 Actions
Transcriptomic analysis of CNS TB 07/17/2020 Katie Lennard Analysis Time spent up until 17/07/2020 29.50 Actions
M. smegmatis variant calling pipeline 06/04/2020 Jon Ambler Investigation Support #117: Variant calling 4.00 Actions
M. smegmatis variant calling pipeline 06/04/2020 Jon Ambler Development Support #114: Preparation of the reusable pipeline 8.00 Actions
M. smegmatis variant calling pipeline 02/14/2020 Jon Ambler Investigation Support #113: QC of files 3.00 Actions
M. smegmatis variant calling pipeline 02/14/2020 Jon Ambler Transfer Support #107: Downloading data from GenoHub 1.00 Actions
The impact of fire and herbivores on soil microbes 02/11/2020 Katie Lennard Development Time spent up until 11/02/2020 20.50 Actions
Transcriptomic analysis of CNS TB 02/11/2020 Katie Lennard Analysis Time spent up until 11/02/2020 22.00 Actions
RNAseq blood profiling of liver fibrosis during schistosomiasis 02/11/2020 Katie Lennard Development Time spent up until 11/02/2020 57.50 Actions
Pathogen outbreak study - Pseudomonas single isolate WGS 02/11/2020 Katie Lennard Analysis Time spent up until 11/02/2020 35.00 Actions
M. smegmatis variant calling pipeline 01/29/2020 Jon Ambler Transfer Support #107: Downloading data from GenoHub Data moved from Genohub to ilifu under /cbio/users/jambler until a project directory is created 1.00 Actions
Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 11/12/2019 Thys Potgieter Development Feature #104: Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added. Latest mRNA data integrated, proteomics average intensity added, addition of InterProScan and KO annotations, tables generated 3.00 Actions
Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 11/12/2019 Thys Potgieter Development Feature #103: Median group intensity added to output for visualization of proteomics target expression profiles Median iBAQ intensity added to summary table, unit-tests added 3.00 Actions
Identification of biomarkers in keloids and folliculitis keloidalis nuchae (FKN) 10/28/2019 Thys Potgieter Analysis Feature #104: Summary table of mRNA and proteomics analysis for identified gene targets, protein level mean abundance per group added. Mean protein abundance added to pipeline output. Started on integrating mRNA in summary table. 2.00 Actions
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